% !TeX spellcheck = cs_CZ
% !TeX root = ../BP_Prokopič_Martin_2021.tex

\section{Datové struktury}

\renewcommand\DTstyle{\sffamily}

\dirtree{%
	.1 alphabet.
	.2 common.
	.3 SymbolCompare.
	.2 MinimalEndSymbol.
	.2 indexes.
	.3 stringology.
	.4 BWTAuxiliaryData.
	.4 SimpleFMIndex.
	.2 string.
	.3 LinearStringTerminatingSymbolBWT.
}

\section{Algoritmy}

\dirtree{%
	.1 alphabet.
	.2 generate.
	.3 BinaryAlphabetFactory.
	.2 compare.
	.3 StringCompare.
	.1 stringology.
	.2 common.
	.3 FMIndexCommon.
	.2 indexing.
	.3 BWTAuxiliaryDataConstruct.
	.3 SimpleFMIndexConstruct.
	.3 SuffixArrayFromBWTNaive.
	.2 query.
	.3 FMIndexCount.
	.3 FMIndexLocate.
	.2 transform.
	.3 BWTDecodeNaive.
	.3 BWTFromSuffixArrayNaive.
	.3 BWTNaive.
}
